Package: DHARMa
Title: Residual Diagnostics for Hierarchical (Multi-Level / Mixed)
        Regression Models
Version: 0.5.0
Date: 2026-05-06
Authors@R: c(person("Florian", "Hartig", email = "florian.hartig@biologie.uni-regensburg.de", role = c("aut", "cre"), comment=c(ORCID="0000-0002-6255-9059")), person("Lukas", "Lohse", role = "ctb"), person("Melina", "de Souza Leite", role = "ctb", comment=c(ORCID="0000-0003-0505-0667")),  person("Cosmina", "Werneke", role = "ctb", comment=c(ORCID="0009-0008-7629-2173")))
Description: "Uses a simulation-based approach to create readily
        interpretable scaled (quantile) residuals for fitted
        generalized linear (mixed) models. Currently supported are
        linear and generalized linear (mixed) models from 'lme4'
        (classes 'lmerMod', 'glmerMod'), 'glmmTMB', 'GLMMadaptive',
        'spaMM', and 'brms' (simple models); phylogenetic linear models
        from 'phylolm' (classes 'phylolm' and 'phyloglm'); generalized
        additive models ('gam' from 'mgcv'); 'glm' (including 'negbin'
        from 'MASS', but excluding quasi-distributions) and 'lm' model
        classes. Moreover, externally created simulations, e.g.
        posterior predictive simulations from Bayesian software such as
        'JAGS', 'STAN', or 'BUGS' can be processed as well. The
        resulting residuals are standardized to values between 0 and 1
        and can be interpreted as intuitively as residuals from a
        linear regression. The package also provides a number of plot
        and test functions for typical model misspecification problems,
        such as over/underdispersion, zero-inflation, and residual
        spatial, temporal and phylogenetic autocorrelation."
Depends: R (>= 3.5.0)
Imports: stats, graphics, utils, grDevices, Matrix, parallel, gap,
        lmtest, ape, qgam (>= 1.3.2), lme4
Suggests: knitr, testthat (>= 3.0.0), rmarkdown, KernSmooth, sfsmisc,
        MASS, mgcv, mgcViz (>= 0.1.9), spaMM (>= 3.2.0), GLMMadaptive,
        glmmTMB (>= 1.1.2.3), phylolm (>= 2.6.5), brms
Enhances: rstan, phyr, rjags, BayesianTools
License: GPL (>= 3)
URL: http://florianhartig.github.io/DHARMa/
LazyData: TRUE
BugReports: https://github.com/florianhartig/DHARMa/issues
RoxygenNote: 7.3.3
Roxygen: list(old_usage = TRUE, markdown = TRUE)
VignetteBuilder: knitr
Encoding: UTF-8
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://staffanbetner.r-universe.dev
Date/Publication: 2026-06-25 10:28:33 UTC
RemoteUrl: https://github.com/florianhartig/DHARMa
RemoteRef: HEAD
RemoteSha: 60ea3db85d86af1a8da2a2242d7b908e272a1c92
RemoteSubdir: DHARMa
NeedsCompilation: no
Packaged: 2026-06-25 11:44:31 UTC; root
Author: Florian Hartig [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6255-9059>),
  Lukas Lohse [ctb],
  Melina de Souza Leite [ctb] (ORCID:
    <https://orcid.org/0000-0003-0505-0667>),
  Cosmina Werneke [ctb] (ORCID: <https://orcid.org/0009-0008-7629-2173>)
Maintainer: Florian Hartig <florian.hartig@biologie.uni-regensburg.de>