Package: rethinking 2.42

Richard McElreath

rethinking: Statistical Rethinking book package

Utilities for fitting and comparing models

Authors:Richard McElreath

rethinking_2.42.tar.gz
rethinking_2.42.zip(r-4.7)rethinking_2.42.zip(r-4.6)rethinking_2.42.zip(r-4.5)
rethinking_2.42.tgz(r-4.6-any)rethinking_2.42.tgz(r-4.5-any)
rethinking_2.42.tar.gz(r-4.7-any)rethinking_2.42.tar.gz(r-4.6-any)
rethinking_2.42.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rethinking/json (API)
NEWS

# Install 'rethinking' in R:
install.packages('rethinking', repos = c('https://staffanbetner.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/staffanbetner/rethinking/issues

Datasets:

On CRAN:

Conda:

5.00 score 5.0k scripts 221 exports 32 dependencies

Last updated from:953f01a28b. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR170
source / vignettesOK227
linux-release-x86_64ERROR181
macos-release-arm64ERROR131
macos-oldrel-arm64ERROR103
windows-develERROR212
windows-releaseERROR138
windows-oldrelERROR129
wasm-releaseOK131

Exports:.requireCachedGenericsadjmat_from_dagAICani.saveqzanim_prior_predictivearrowsplineaxis_unscalebinsblankblank2brain_loo_plotbrain_plotchainmodecheck_indexchoose.csvcirclecloglogcmdstanr_model_writecoefcoeftabcoeftab_plotcoeftab_showcoerce_indexcol.alphacol.desatcol.distcompareconcatconfint_quadcontour_xyzcov_GPL2cov_GPL2_scalcovmatcstancv_data_slicecv_quapdag_arcdag_copy_coordsdagfx_anim_backwarddagfx_anim_forwarddagfx_dotdashboarddberndbeta2dbetabinomdcategoricaldensdenschartdeviancedgamma2dgampoisdgnormdgparetoDICdimsdivergence_trackerdivergentdlaplacedlkjcorrdmvnormdmvnorm2dordlogitdparetodrawdagdrawopenpathsdstudentdzagamma2dzibinomdzipoisensembleextract_post_cstanextract_post_ulamextract_prior_ulamextract_prior_ulam_protoextract.priorextract.samplesfclipflistflist_untagformat_showglimmergoCaslonPrographdaggrauhistosparkHMC_2D_sampleHMC2HPDIhtmlhelpICweightsimage_xyzinv_clogloginv_logitinv_uniflines_wlines_xkcdlinklink_ulamlog_sum_explogisticlogitlogLikLOOlppdmake_barmake_ukeymake.gridmapmap2stanmap2stan.templatesmcmcpairsmcmcpairs_oldmcreplicatemultilogisticnobsnormalizepairsPCIpdfblankPIPIprimesplotplot2yplotchainsplotpostplppordlogitpostcheckpostlistprecispostmeansprecisprecis_cmdstanfitprecis_formatprecis_plotprecis_showprecis_show_oldprecis.whitelistprecisxpredict_ordlogitprogbarPSISPSIS_listPSIS_map2stanPSIS_quapPSIS_stanfitPSIS_ulamPSISkquaprangi2rank_matrbernrbeta2rbetabinomrcategoricalreplicate2resampleresample_oldrethink_cmykrethink_palettergamma2rgampoisrgampois2rgparetoRhorinvwishartrlaplacerlkjcorrrmvnormrmvnorm2rordlogitrparetorrformatrstudentrzibinomrzipoissample.naive.posteriorsample.qa.posteriorsd_popsd2sesegmentsbyset_nice_marginsset_ulam_cmdstansetcranshadeshow.naive.posteriorsimsim_coresim_happinesssim_train_testsim_ulamsim_ulam_newsim.train.testsimplehistsimplehist_oldsketchdagsoftmaxsparksstanstan_sampling_durationstan_total_samplesstancodestandardizestanergysummarytest_ulamtraceplottraceplot_ulamtracerplottrankplotulamulam_distsulam_macrosulam_optionsunstandardizevar_popvar2vcovWAICWAICpyn2bin

Dependencies:abindbackportscheckmateclicmdstanrcodadata.tabledistributionalgenericsgluejsonlitelatticelifecycleloomagrittrMASSmatrixStatsmvtnormnumDerivpillarpkgconfigposteriorprocessxpsR6rlangshapetensorAtibbleutf8vctrswithr

Readme and manuals

Help Manual

Help pageTopics
Statistical Rethinking packagerethinking-package rethinking
Human forager hunting returns dataAchehunting
Ante-mortem Tooth Loss DataAMTL AMTL_short
Draw an axis with units on original scaleaxis_unscale
Bangladesh contraceptive use databangladesh
Social learning experimental dataBoxes
Find mode of a continuous density estimatechainmode
Japan Cherry Blossom Historical Datacherry_blossoms
Chimpanzee prosocialty experiment datachimpanzees
Coefficient tablescoeftab
Plots of coefficient tablescoeftab_plot
Build and check integer index variablescheck_index coerce_index
Color utility functionscol.alpha col.desat col.dist grau
Compare fit models using WAIC or DICcompare ICweights
Contour plot from equal length x,y,z vectorscontour_xyz
Capuchin monkey contestsCrofoot
Diagnostic trace and rank histogram plots for MCMC outputcv_quap
Beta-binomial probability densitydbetabinom rbetabinom
Density plotsdens
Gamma-Poisson probability densitydgampois rgampois
Dinosaur growth dataDinosaurs
Dissertation page length dataDissertations
LKJ correlation matrix probability densitydlkjcorr rlkjcorr
Multivariate Gaussian probability densitydmvnorm2 rmvnorm2
Ordered categorical log-odds probability densitydordlogit pordlogit rordlogit
Plot Directed Acyclic Graphs (dagitty)drawdag drawopenpaths
Non-standard Student's t distributiondstudent rstudent
Zero-augmented gamma probability densitydzagamma2
Zero-inflated binomial probability densitydzibinom rzibinom
Zero-inflated Poisson probability densitydzipois rzipois
Simulate an ensemble of posterior predictionsensemble
Collect posterior or prior samples from a map or map2stan modelextract.prior extract.samples
Fishing dataFish
Urban foxesfoxes
glm/glmer formulas to map/map2stan formulasglimmer
Functions for simple HMC simulationsHMC2 HMC_2D_sample
Prairie dog dispersal dataHoogland
Howell !Kung demography dataHowell1 Howell2
Confidence/credible intervals from samplesHPDI PCI PI
Hurricane fatalities and gender of namesHurricanes
Heat map from equal length x,y,z vectorsimage_xyz
Oceanic islands dataislands islandsDistMatrix Kline Kline2
Gift exchange dataKosterLeckie
Corporate tax rates and tax revenue for 20 nationsLaffer
Predictions for map and map2stan modelslink link,lm-method link,map-method link,map2stan-method link-methods
Rethinking utility functionslog_sum_exp
Build RStan models from formulasmap2stan
Class 'map2stan': fitted map2stan Stan modeldeviance,map2stan-method DIC,map2stan-method extract.samples,map2stan-method logLik,map2stan-method map2stan-class nobs,map2stan-method pairs,map2stan-method plot,map2stan-method show,map2stan-method sim,map2stan-method stancode,map2stan-method summary,map2stan-method vcov,map2stan-method WAIC,map2stan-method
Multi-core version of replicatemcreplicate
Primate milk datamilk
Religious ideology and population growthMoralizing_gods
Trace plot of map2stan chainspairs.map pairs.map2stan
Chimpanzees cracking Panda nutsPanda_nuts
Trace plot of map2stan chainsplot.map2stan
Plot posterior predictive checkpostcheck
Precis of model fitprecis
Primate life history and social learning dataPrimates301
Progress displayprogbar
Numbers of soldiers killed by horse kicks in the Prussian army 1875-1894PrussianHorses
Compute quadratic approximate posterior distributionmap quap
Data on reed frog predation experimentsreedfrogs
Resample map2stan fitresample
Livestock mortality dataRinder
Samples from quadratic posterior densities of modelssample.naive.posterior sample.qa.posterior
Shade density intervalsshade
Simulate posterior observationssim sim,lm-method sim,map-method sim,map2stan-method sim-methods
Simulate in-sample and out-of-sample model performancesim.train.test sim_train_test
Simple histogramssimplehist
Diagnostic trace and rank histogram plots for MCMC outputtraceplot trankplot
Experimental data on ethical dilemmasTrolley
Ultimate Fighting Championship matchesUFClefties
Build RStan models from formulasulam
Waffle House and marriage statisticsWaffleDivorce
Information Criteria and Pareto-Smoothed Importance Sampling Cross-ValidationDIC LOO PSIS WAIC
Wine tasting scores, Princeton NJ 2012Wines2012